- Class: 2
- Architecture: 2.40:Beta Barrel
- Topology: 2.40.440:L,D-transpeptidase catalytic domain-like
- Homology: 2.40.440.10:L,D-transpeptidase catalytic domain-like
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1y7m | [A2] | [A2] | [A2] | 2.05 | CD:CADMIUM ION MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
1zat | [A] | [A] | [A] | 2.4 | SO4:SULFATE ION ZN:ZINC ION | |||
2hkl | [A] | [A] | [A] | 2.6 | SO4:SULFATE ION | |||
2mtz | [A][a6] | [A][a6] | [A][a6] | NOTAPPLICABLE. | AMU:N-ACETYL-BETA-MURAMIC ACID API:2,6-DIAMINOPIMELIC ACID DAL:D-ALANINE FGA:GAMMA-D-GLUTAMIC ACID NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE | |||
3tur | [A] | [A] | [A] | 1.72 | 0JC:DI-MU-IODOBIS(ETHYLENEDIAMINE)DIPLATINUM(II) 6CL:6-CARBOXYLYSINE DGL:D-GLUTAMIC ACID PT:PLATINUM (II) ION | |||
3tx4 | [A] | [A] | [A] | 2.32 | ||||
3u1p | [A] | [A] | [A] | 2.8 | CSO:S-HYDROXYCYSTEINE PEG:DI(HYDROXYETHYL)ETHER | |||
3u1q | [A] | [A] | [A] | 2.4 | BME:BETA-MERCAPTOETHANOL PEG:DI(HYDROXYETHYL)ETHER | |||
3vae | [A] | [A] | [A] | 2.8 | CSO:S-HYDROXYCYSTEINE PEG:DI(HYDROXYETHYL)ETHER | |||
3vyn | [A] | [A] | [A] | 2.5 | ||||
3vyo | [A] | [A] | [A] | 1.8 | MSE:SELENOMETHIONINE | |||
3vyp | [A] | [A] | [A] | 1.4 | GOL:GLYCEROL MXR:(2S,3R,4S)-4-{[(3S,5R)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID | |||
3zg4 | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
3zgp | [A] | [A] | [A] | NOTAPPLICABLE. | 1RG:(4R,5S)-3-({(3S,5S)-5-[(3-CARBOXYPHENYL)CARBAMOYL]PYRROLIDIN-3-YL}SULFANYL)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-4-METHYL-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID | |||
3zqd | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
4a1i | [A2] | [A2] | [A2] | 1.76 | CD:CADMIUM ION CL:CHLORIDE ION SO4:SULFATE ION | |||
4a1j | [A2] | [A2] | [A2] | 2.2 | SO4:SULFATE ION | |||
4a1k | [A2] | [A2] | [A2] | 1.75 | CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE SO4:SULFATE ION | |||
4a52 | [A] | [A] | [A] | NOTAPPLICABLE. | IM2:(5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID | |||
4gsq | [A] | [A] | [A] | 1.8 | CA:CALCIUM ION GOL:GLYCEROL | |||
4gsr | [A] | [A] | [A] | 1.79 | EMT:2-(ETHYLMERCURI-THIO)-BENZOIC ACID GOL:GLYCEROL | |||
4gsu | [A] | [A] | [A] | 2 | DWZ:(2S,3R,4S)-4-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID | |||
4huc | [A] | [A] | [A] | 1.86 | ACT:ACETATE ION NA:SODIUM ION | |||
4jmn | [A] | [A] | [A] | 2.2 | ||||
4jmx | [A] | [A] | [A] | 2.55 | IM2:(5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID | |||
4k73 | [A] | [A] | [A] | 1.65 | CA:CALCIUM ION | |||
4lpq | [A] | [A] | [A] | 1.37 | CL:CHLORIDE ION MSE:SELENOMETHIONINE | |||
4qr7 | [A] | [A] | [A] | 2.3 | DWZ:(2S,3R,4S)-4-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID MLD:GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA | |||
4qra | [A] | [A] | [A] | 2.29 | CA:CALCIUM ION | |||
4qrb | [A] | [A] | [A] | 1.64 | MLD:GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA | |||
4qtf | [A] | [A] | [A] | 2 | 3V5:(3S,5S)-3-({[(AMINOMETHYL)AMINO]METHYL}SULFANYL)-5-[(2S)-1,3-DIOXOBUTAN-2-YL]-L-PROLINE MLD:GLCNAC(BETA1-4)-MURNAC(1,6-ANHYDRO)-L-ALA-GAMMA-D-GLU-MESO-A2PM-D-ALA | |||
4xvo | [A] | [A] | [A] | 2.6 | MSE:SELENOMETHIONINE PO4:PHOSPHATE ION | |||
4z7a | [A] | [A] | [A] | 1.98 | ACE:ACETYL GROUP PEG:DI(HYDROXYETHYL)ETHER PGE:TRIETHYLENE GLYCOL PO4:PHOSPHATE ION | |||
4zfq | [A] | [A] | [A] | 2.8 | DWZ:(2S,3R,4S)-4-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID PEG:DI(HYDROXYETHYL)ETHER | |||
5d7h | [A] | [A] | [A] | 2.49 | GOL:GLYCEROL SO4:SULFATE ION | |||
5dc2 | [A] | [A] | [A] | 2.18 | 58U:(4S)-4-METHYL-2,5,7-TRIOXOHEPTANOIC ACID EDO:1,2-ETHANEDIOL GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER PGE:TRIETHYLENE GLYCOL SO4:SULFATE ION | |||
5dcc | [A] | [A] | [A] | 2.45 | 58U:(4S)-4-METHYL-2,5,7-TRIOXOHEPTANOIC ACID EDO:1,2-ETHANEDIOL GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER PGE:TRIETHYLENE GLYCOL SO4:SULFATE ION | |||
5du7 | [A] | [A] | [A] | 1.79 | ||||
5duj | [A] | [A] | [A] | 2.17 | BME:BETA-MERCAPTOETHANOL DGF:(2R,5R)-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-5-[(2R)-TETRAHYDROFURAN-2-YL]-2,5-DIHYDRO-1,3-THIAZOLE-4-CARBOXYLIC ACID SO4:SULFATE ION | |||
5dvp | [A] | [A] | [A] | 2.18 | DRW:(2S,3R,4S)-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3-METHYL-4-({(3S,5S)-5-[(SULFAMOYLAMINO)METHYL]PYRROLIDIN-3-YL}SULFANYL)-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID POA:PHOSPHONOACETALDEHYDE SO4:SULFATE ION | |||
5dzj | [A] | [A] | [A] | 2.1 | 6B7:(2~{R},3~{R},4~{R})-4-METHYL-3-(2-OXIDANYLIDENE-2-PROPOXY-ETHYL)SULFANYL-5-[(2~{S},3~{R})-3-OXIDANYL-1-OXIDANYLIDENE-BUTAN-2-YL]-3,4-DIHYDRO-2~{H}-PYRROLE-2-CARBOXYLIC ACID | |||
5dzp | [A] | [A] | [A] | 2.19 | 6B7:(2~{R},3~{R},4~{R})-4-METHYL-3-(2-OXIDANYLIDENE-2-PROPOXY-ETHYL)SULFANYL-5-[(2~{S},3~{R})-3-OXIDANYL-1-OXIDANYLIDENE-BUTAN-2-YL]-3,4-DIHYDRO-2~{H}-PYRROLE-2-CARBOXYLIC ACID | |||
5e1g | [A] | [A] | [A] | 1.85 | T8G:(2~{S},3~{R},4~{R})-4-(2-CYCLOHEXYLOXY-2-OXIDANYLIDENE-ETHYL)SULFANYL-3-METHYL-2-[(2~{S},3~{R})-3-OXIDANYL-1-OXIDANYLIDENE-BUTAN-2-YL]-3,4-DIHYDRO-2~{H}-PYRROLE-5-CARBOXYLIC ACID | |||
5e1i | [A] | [A] | [A] | 2 | 6B8:(2S,3R,4R)-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-3-METHYL-4-(METHYLSULFANYL)-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID GOL:GLYCEROL NA:SODIUM ION | |||
5e51 | [A] | [A] | [A] | 2.25 | 5KO:(3R)-3-HYDROXYBUTANAL | |||
5e5l | [A] | [A] | [A] | 1.89 | ||||
5k69 | [A] | [A] | [A] | 2 | 6QR:(2~{S},3~{R},4~{R})-4-(1~{H}-INDOL-3-YLSULFANYL)-3-METHYL-2-[(2~{S},3~{S})-3-OXIDANYL-1-OXIDANYLIDENE-BUTAN-2-YL]-3,4-DIHYDRO-2~{H}-PYRROLE-5-CARBOXYLICACID GOL:GLYCEROL | |||
5lb1 | [A] | [A] | [A] | 1.55 | MNB:5-MERCAPTO-2-NITRO-BENZOIC ACID | |||
5lbg | [A] | [A] | [A] | 1.54 | 3HL:(3S)-3-HYDROXYBUTANOIC ACID | |||
5uwv | [A] | [A] | [A] | 2.98 | ||||
6boi | [A] | [A] | [A] | 2.1 | E0Y:(3S,5R)-5-[(2R,3R)-1,3-DIHYDROXYBUTAN-2-YL]-3-({(3R)-1-[(1E)-ETHANIMIDOYL]PYRROLIDIN-3-YL}SULFANYL)-L-PROLINE GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION | |||
6d4k | [A] | [A] | [A] | 1.32 | CA:CALCIUM ION | |||
6d51 | [A] | [A] | [A] | 1.83 | ACE:ACETYL GROUP CA:CALCIUM ION | |||
6d5a | [A] | [A] | [A] | 2.62 | PG4:TETRAETHYLENE GLYCOL | |||
6fj1 | [A] | [A] | [A] | 2.69 | CL:CHLORIDE ION GOL:GLYCEROL NXL:(2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2-CARBOXAMIDE P3G:3,6,9,12,15-PENTAOXAHEPTADECANE | |||
6iyv | [A] | [A] | [A] | 1.5 | 2RG:(2S,3R,4S)-4-({(3S,5S)-5-[(3-CARBOXYPHENYL)CARBAMOYL]PYRROLIDIN-3-YL}SULFANYL)-2-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
6iyw | [A] | [A] | [A] | 1.6 | GOL:GLYCEROL IM2:(5R)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-3-[(2-{[(E)-IMINOMETHYL]AMINO}ETHYL)SULFANYL]-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA